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Major Physiology and Physics (82 credits)

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Offered by: Physiology     Degree: Bachelor of Science

Program Requirements

This program provides a firm foundation in physics, mathematics, and physiology. It is appropriate for students interested in applying methods of the physical sciences to problems in physiology and allied biological sciences.

Required Courses (76 credits)

Bio-Physical Sciences Core

  • BIOL 219 Introduction to Physical Biology of the Cell (4 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : This course is an introduction to molecular and cell biology, using a physical biology perspective. New technologies and methodologies, both experimental and computational, are embedded in the presentation of each topic.

    Terms: Fall 2018

    Instructors: Weber, Stephanie; Bub, Gil; Vogel, Jacalyn; Hendricks, Adam (Fall)

    • Prerequisite(s): 1 year of college calculus, chemistry, and physics or equivalents, BIOL 112 or equivalent

    • Corequisite(s): MATH 222 and CHEM 212

    • Restriction(s): Not open to students who have taken or are taking ANAT 212, BIOC 212, BIOL 200, and BIOL 201.

    • Restricted to students in Computer Science-Biology, Biology-Mathematics, Physiology-Physics, Physiology-Mathematics, Biology-Quantitative Biology, Chemistry-Biophysical Chemistry, and Physics-Biological Physics options.

    • This course is meant to prepare students for related 300-level courses in Biology, Chemistry, Physics, etc.

  • BIOL 395 Quantitative Biology Seminar 1 (1 credit)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Overview of concepts and current research in quantitative biology; theoretical ecology and evolution, computational biology, and physical biology.

    Terms: Fall 2018

    Instructors: Hayer, Arnold; Gehring, Kalle Burgess; Guichard, Frederic; Western, Tamara; Brouhard, Gary; Kleinman, Claudia; Oeffinger, Marlene; Reyes Lamothe, Rodrigo; Weber, Stephanie (Fall)

    • Fall

    • Prerequisites: BIOL 200, CHEM 212, COMP 250, MATH 222, PHYS 230

    • Restriction: Registration restricted to U2 students in the Quantitative Biology program, joint Computer Science and Biology and joint Math and Biology programs.

  • MATH 222 Calculus 3 (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Taylor series, Taylor's theorem in one and several variables. Review of vector geometry. Partial differentiation, directional derivative. Extreme of functions of 2 or 3 variables. Parametric curves and arc length. Polar and spherical coordinates. Multiple integrals.

    Terms: Fall 2018, Winter 2019, Summer 2019

    Instructors: Macdonald, Jeremy; Faifman, Dmitry (Fall) Sektnan, Lars (Winter) Pequignot, Yann Batiste (Summer)

  • MATH 223 Linear Algebra (3 credits) *

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Review of matrix algebra, determinants and systems of linear equations. Vector spaces, linear operators and their matrix representations, orthogonality. Eigenvalues and eigenvectors, diagonalization of Hermitian matrices. Applications.

    Terms: Fall 2018, Winter 2019

    Instructors: Kelome, Djivede (Fall) Macdonald, Jeremy (Winter)

    • Fall and Winter

    • Prerequisite: MATH 133 or equivalent

    • Restriction: Not open to students in Mathematics programs nor to students who have taken or are taking MATH 236, MATH 247 or MATH 251. It is open to students in Faculty Programs

  • MATH 247 Honours Applied Linear Algebra (3 credits) *

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Matrix algebra, determinants, systems of linear equations. Abstract vector spaces, inner product spaces, Fourier series. Linear transformations and their matrix representations. Eigenvalues and eigenvectors, diagonalizable and defective matrices, positive definite and semidefinite matrices. Quadratic and Hermitian forms, generalized eigenvalue problems, simultaneous reduction of quadratic forms. Applications.

    Terms: Winter 2019

    Instructors: Hoheisel, Tim (Winter)

    • Winter

    • Prerequisite: MATH 133 or equivalent.

    • Restriction: Intended for Honours Physics and Engineering students

    • Restriction: Not open to students who have taken or are taking MATH 236, MATH 223 or MATH 251

  • MATH 315 Ordinary Differential Equations (3 credits) **

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First order ordinary differential equations including elementary numerical methods. Linear differential equations. Laplace transforms. Series solutions.

    Terms: Fall 2018, Winter 2019, Summer 2019

    Instructors: Nave, Jean-Christophe (Fall) Humphries, Antony Raymond (Winter) Roth, Charles (Summer)

    • Prerequisite: MATH 222.

    • Corequisite: MATH 133.

    • Restriction: Not open to students who have taken or are taking MATH 325.

  • MATH 325 Honours Ordinary Differential Equations (3 credits) **

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First and second order equations, linear equations, series solutions, Frobenius method, introduction to numerical methods and to linear systems, Laplace transforms, applications.

    Terms: Winter 2019

    Instructors: Lessard, Jean-Philippe (Winter)

    • Fall and Winter

    • (3-0-6)

    • Prerequisite: MATH 222.

    • Restriction: Intended for Honours Mathematics, Physics and Engineering programs.

    • Restriction: Not open to students who have taken MATH 263 (formerly MATH 261), MATH 315

  • PHYS 329 Statistical Physics with Biophysical Applications (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : This interdisciplinary course introduces Statistical Physics illustrated with modern biophysical applications. Principles covered include partition functions, Boltzmann distribution, bosons, fermions, Bose Einstein condensates, Ferni gases, chemical potential, thermodynamical forces, biochemical kinetics, and an introduction to noise and phase transitions in biology.

    Terms: Winter 2019

    Instructors: Leslie, Sabrina (Winter)

* Students may take either MATH 223 or MATH 247.
** Students may take either MATH 315 or MATH 325.

Physiology and Physics Core

  • BMDE 519 Biomedical Signals and Systems (3 credits)

    Offered by: Biomedical Engineering (Faculty of Engineering)

    Overview

    Biomedical Engineering : An introduction to the theoretical framework, experimental techniques and analysis procedures available for the quantitative analysis of physiological systems and signals. Lectures plus laboratory work using the Biomedical Engineering computer system. Topics include: amplitude and frequency structure of signals, filtering, sampling, correlation functions, time and frequency-domain descriptions of systems.

    Terms: Fall 2018

    Instructors: Kearney, Robert E (Fall)

    • (3-0-6)

    • Prerequisites: Satisfactory standing in U3 Honours Physiology; or U3 Major in Physics-Physiology; or U3 Major Physiology-Mathematics; or permission of instructor

  • MATH 248 Honours Advanced Calculus (3 credits) ***

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Partial derivatives; implicit functions; Jacobians; maxima and minima; Lagrange multipliers. Scalar and vector fields; orthogonal curvilinear coordinates. Multiple integrals; arc length, volume and surface area. Line integrals; Green's theorem; the divergence theorem. Stokes' theorem; irrotational and solenoidal fields; applications.

    Terms: Fall 2018

    Instructors: Guan, Pengfei (Fall)

    • Fall and Winter and Summer

    • Prerequisites: MATH 133 and MATH 222 or consent of Department.

    • Restriction: Intended for Honours Mathematics, Physics and Engineering students

    • Restriction: Not open to students who have taken or are taking MATH 314

  • MATH 314 Advanced Calculus (3 credits) ***

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Derivative as a matrix. Chain rule. Implicit functions. Constrained maxima and minima. Jacobians. Multiple integration. Line and surface integrals. Theorems of Green, Stokes and Gauss. Fourier series with applications.

    Terms: Fall 2018, Winter 2019

    Instructors: Roth, Charles (Fall) Drury, Stephen W (Winter)

  • MATH 326 Nonlinear Dynamics and Chaos (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Linear systems of differential equations, linear stability theory. Nonlinear systems: existence and uniqueness, numerical methods, one and two dimensional flows, phase space, limit cycles, Poincare-Bendixson theorem, bifurcations, Hopf bifurcation, the Lorenz equations and chaos.

    Terms: Fall 2018

    Instructors: Lessard, Jean-Philippe (Fall)

  • MATH 437 Mathematical Methods in Biology (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : The formulation and treatment of realistic mathematical models describing biological phenomena through qualitative and quantitative mathematical techniques (e.g. local and global stability theory, bifurcation analysis and phase plane analysis) and numerical simulation. Concrete and detailed examples will be drawn from molecular and cellular biology and mammalian physiology.

    Terms: Winter 2019

    Instructors: Khadra, Anmar (Winter)

  • PHGY 209 Mammalian Physiology 1 (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : Physiology of body fluids, blood, body defense mechanisms, muscle, peripheral, central, and autonomic nervous systems.

    Terms: Fall 2018

    Instructors: Vollrath, Melissa; Gold, Phil; Wechsler, Ann; Ragsdale, David S; Shrier, Alvin; Cook, Erik (Fall)

  • PHGY 210 Mammalian Physiology 2 (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : Physiology of cardiovascular, respiratory, digestive, endocrine and renal systems.

    Terms: Winter 2019

    Instructors: Vollrath, Melissa; Campeau, Lysanne; Takano, Tomoko; Guevara, Michael R; Lauzon, Anne-Marie; White, John H (Winter)

  • PHGY 212 Introductory Physiology Laboratory 1 (1 credit)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : Exercises illustrating fundamental principles in physiology: Biological Signals Acquisitions, Blood, Immunology, Neurophysiology, Neuromuscular Physiology.

    Terms: Fall 2018

    Instructors: Vollrath, Melissa; Glavinovic, Mladen I; Mandl, Judith (Fall)

    • (One 3-hour lab and one 1-hour lecture every second week.)

    • Corequisite: PHGY 209.

    • Restrictions: Required for Physiology students enrolled in PHGY 209. Open to BA &Sc. students and to others by permission of the instructor. Not open to students who have taken PHGY 212D1/D2.

    • Note: For students in a Physiology program, PHGY 212 should be taken concurrently with PHGY 209.

  • PHGY 213 Introductory Physiology Laboratory 2 (1 credit)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : Exercises illustrating fundamental principles in physiology: Central Nervous System, Cardiovascular, Respiration, Exercise Physiology, Molecular Endocrinology.

    Terms: Winter 2019

    Instructors: Guevara, Michael R; Mortola, Jacopo; Magder, Sheldon A; White, John H; Vollrath, Melissa (Winter)

    • (One 3-hour lab and one 1-hour lecture every second week.)

    • Prerequisite: PHGY 212

    • Corequisite: PHGY 210.

    • Restrictions: Required for Physiology students enrolled in PHGY 210. Open to BA &Sc. students and to others by permission of the instructor. Not open to students who have taken PHGY 212D1/D2.

    • Note: For students in a Physiology program, PHGY 213 should be taken concurrently with PHGY 210.

  • PHGY 312 Respiratory, Renal, & Cardiovascular Physiology (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : In-depth presentation of experimental results and hypotheses underlying our current understanding of topics in renal, respiratory and cardiovascular functions explored beyond the introductory level.

    Terms: Winter 2019

    Instructors: Hanrahan, John W; Mortola, Jacopo; Shrier, Alvin; Magder, Sheldon A (Winter)

    • Winter

    • 3 hours of lectures per week; 1-3 hours optional lab/demonstration/tutorial arranged for a maximum of 3 Wednesday afternoons per term

    • Prerequisites: PHGY 209 and PHGY 210 or equivalent, PHGY 311 or permission of the instructor

  • PHGY 313 Blood, Gastrointestinal, & Immune Systems Physiology (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : In-depth presentation of experimental results and hypotheses underlying our current understanding of topics in immunology, blood and fluids, and gastrointestinal physiology.

    Terms: Winter 2019

    Instructors: Mandl, Judith; Mercier, Francois; Orthwein, Alexandre; Kokoeva, Maia; Vollrath, Melissa; Fritz, J枚rg; Quail, Daniela (Winter)

    • Winter

    • 3 hours of lectures per week; 1-3 hours optional lab/demonstration/tutorial arranged for a maximum of 3 Wednesday afternoons per term

    • Prerequisites: PHGY 209 and PHGY 210 or equivalent, PHGY 311 or permission of the instructor

  • PHGY 461D1 Experimental Physiology (4.5 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : Individual project work under the supervision of Departmental Staff members.

    Terms: Fall 2018

    Instructors: Wechsler, Ann; Cooper, Linda H; Orlowski, John; Vollrath, Melissa (Fall)

    • Fall

    • Restrictions: Departmental approval required. This course is a requirement for U3 students in the Honours Physiology program, the Major Program in Physiology and Mathematics, and the Major program in Physiology and Physics, and is open to a limited number of other U3 Physiology students.

    • Students must register for both PHGY 461D1 and PHGY 461D2.

    • No credit will be given for this course unless both PHGY 461D1 and PHGY 461D2 are successfully completed in consecutive terms

  • PHGY 461D2 Experimental Physiology (4.5 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : See PHGY 461D1 for course description.

    Terms: Winter 2019

    Instructors: Wechsler, Ann; Orlowski, John; Vollrath, Melissa (Winter)

    • Winter

    • Prerequisite: PHGY 461D1

    • No credit will be given for this course unless both PHGY 461D1 and PHGY 461D2 are successfully completed in consecutive terms

  • PHYS 230 Dynamics of Simple Systems (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Translational motion under Newton's laws; forces, momentum, work/energy theorem. Special relativity; Lorentz transforms, relativistic mechanics, mass/energy equivalence. Topics in rotational dynamics. Noninertial frames.

    Terms: Fall 2018

    Instructors: Dasgupta, Keshav (Fall)

    • Fall

    • 3 hours lectures

    • Prerequisite: CEGEP Physics or PHYS 131.

    • Corequisite: MATH 222

    • Restriction: Not open to students taking or having passed PHYS 251

  • PHYS 232 Heat and Waves (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : The laws of thermodynamics and their consequences. Thermodynamics of P-V-T systems and simple heat engines. Free, driven, and damped harmonic oscillators. Coupled systems and normal modes. Fourier methods. Wave motion and dispersion. The wave equation.

    Terms: Winter 2019

    Instructors: Rutledge, Robert (Winter)

    • Winter

    • 3 hours lectures

    • Prerequisites: CEGEP Physics or PHYS 142, and CEGEP chemistry or CHEM 120, and PHYS 230.

    • Restriction: Not open to students taking or having passed PHYS 253

  • PHYS 241 Signal Processing (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Linear circuit elements, resonance, network theorems, diodes, transistors, amplifiers, feedback, integrated circuits.

    Terms: Winter 2019

    Instructors: Dobbs, Matthew Adam (Winter)

    • Winter

    • 2 hours lectures; 3 hours laboratory alternate weeks

    • Prerequisite: CEGEP physics or PHYS 142.

  • PHYS 257 Experimental Methods 1 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introductory laboratory work and data analysis as related to mechanics, optics and thermodynamics. Introduction to computers as they are employed for laboratory work, for data analysis and for numerical computation. Previous experience with computers is an asset, but is not required.

    Terms: Fall 2018

    Instructors: Siwick, Bradley (Fall)

    • Fall

    • 6 hours of laboratory and classroom work

    • Corequisite: PHYS 230 or PHYS 251

  • PHYS 258 Experimental Methods 2 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Advanced laboratory work and data analysis as related to mechanics, optics and thermodynamics. Computers will be employed routinely for data analysis and for numerical computation, and, particularly, to facilitate the use of Fourier methods.

    Terms: Winter 2019

    Instructors: Brunner, Thomas (Winter)

    • Winter

    • 6 hours of laboratory and classroom work

    • Prerequisite: PHYS 257

  • PHYS 339 Measurements Laboratory in General Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introduction to modern techniques of measurement. The use of computers in performing and analysing experiments. Data reduction, statistical methods, report writing. Extensive use of computers is made in this laboratory; therefore some familiarity with computers and computing is an advantage.

    Terms: Winter 2019

    Instructors: Reisner, Walter (Winter)

    • Winter

    • 6 hours

    • Prerequisite: PHYS 241 or permission of instructor

  • PHYS 340 Majors Electricity and Magnetism (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : The electrostatic field and scalar potential. Dielectric properties of matter. Energy in the electrostatic field. Methods for solving problems in electrostatics. The magnetic field. Induction and inductance. Energy in the magnetic field. Magnetic properties of matter. Maxwell's equations. The dipole approximation.

    Terms: Fall 2018

    Instructors: Rutledge, Robert (Fall)

  • PHYS 446 Majors Quantum Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : de Broglie waves, Bohr atom. Schroedinger equation, wave functions, observables. One dimensional potentials. Schroedinger equation in three dimensions. Angular momentum, hydrogen atom. Spin, experimental consequences.

    Terms: Fall 2018

    Instructors: Childress, Jack (Fall)

*** Students may take either MATH 248 or MATH 314.

Complementary Courses (6 credits)

3 credits, one of:

  • PHGY 311 Channels, Synapses and Hormones (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : In-depth presentation of experimental results and hypotheses on cellular communication in the nervous system and the endocrine system.

    Terms: Fall 2018

    Instructors: Cooper, Ellis; Sjostrom, Per Jesper; Krishnaswamy, Arjun; Sharif Naeini, Reza (Fall)

    • Fall

    • 3 hours of lectures per week; 1-3 hours optional lab/demonstration/tutorial arranged for a maximum of 3 afternoons per term

    • Prerequisite: PHGY 209 or permission of the instructor.

  • PHGY 314 Integrative Neuroscience (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : In depth presentation of experimental results and hypotheses underlying our current understanding of how single neurons and ensembles of neurons encode sensory information, generate movement, and control cognitive functions such as emotion, learning, and memory, during voluntary behaviours.

    Terms: Fall 2018

    Instructors: Chacron, Maurice; Sharif Naeini, Reza; Cook, Erik; Pack, Christopher; Shmuel, Amir; Vollrath, Melissa; Brandon, Mark (Fall)

    • Fall

    • 3 hours of lectures per week

    • Prerequisites: PHGY 209

3 credits, one of:

  • PHYS 413 Physical Basis of Physiology (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Analytic and computer simulation techniques are used to examine the role of nonlinearities and time delays in determining the dynamic behaviour of physiological control systems and their relation to normal and pathophysiological states. Examples drawn from the control of respiration, cellular proliferation and differentiation, biochemical feedback networks, thermoregulatory mechanisms, and neural feedback.

    Terms: This course is not scheduled for the 2018-2019 academic year.

    Instructors: There are no professors associated with this course for the 2018-2019 academic year.

    • Fall

    • 3 hours lectures

    • Prerequisite: MATH 315, or MATH 325, and permission of the instructor

    • Intended for Major or Honours students in Physics, Physiology, Physiology and Physics, or Mathematics and others with permission

  • PHYS 519 Advanced Biophysics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : An advanced biophysics course, with a special emphasis on stochastic and out of equilibrium physical processes in living matter.

    Terms: Winter 2019

    Instructors: Francois, Paul (Winter)

Faculty of Science—2018-2019 (last updated Aug. 22, 2018) (disclaimer)
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